STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK54349.1Hypothetical protein; SMART: Helix-turn-helix XRE-family like proteins; Pfam: Helix-turn-helix. (193 aa)    
Predicted Functional Partners:
AMK54350.1
Metallo-beta-lactamase domain protein; Pfam: Metallo-beta-lactamase superfamily; SMART: Metallo-beta-lactamase superfamily.
  
    0.792
AMK54348.1
Hypothetical protein.
       0.572
AMK55187.1
Hypothetical protein; Pfam: Glycosyl transferase family 2.
 
   
 0.490
cobB
NAD+-protein-arginine ADP-ribosyltransferase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form.
 
    0.488
AMK53669.1
Hypothetical protein; 'SMART: helix_turn_helix, arabinose operon control protein; Pfam: Helix-turn-helix domain'.
 
 
 0.480
AMK55067.1
Hypothetical protein; Pfam: Peptidase C26.
  
  
 0.477
AMK55714.1
Prephenate dehydratase; Pfam: Chorismate mutase type II; SMART: Chorismate mutase type II; Pfam: Prephenate dehydratase.
  
  
 0.477
AMK53556.1
Hypothetical protein; 'Pfam: UTRA domain; Pfam: Bacterial regulatory proteins, gntR family'.
  
  
 0.469
AMK54064.1
Hypothetical protein; 'Pfam: UTRA domain; Pfam: Bacterial regulatory proteins, gntR family; SMART: helix_turn_helix gluconate operon transcriptional repressor; PRINTS: GntR bacterial regulatory protein HTH signature'.
  
  
 0.469
AMK55285.1
Hypothetical protein; 'PRINTS: GntR bacterial regulatory protein HTH signature; Pfam: UTRA domain; Pfam: Bacterial regulatory proteins, gntR family; SMART: helix_turn_helix gluconate operon transcriptional repressor'.
  
  
 0.469
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.