STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK54363.1PRINTS: Aldo-keto reductase signature; Pfam: Aldo/keto reductase family. (161 aa)    
Predicted Functional Partners:
AMK54362.1
2,5-diketo-D-gluconic acid reductase; PRINTS: Aldo-keto reductase signature; Pfam: Aldo/keto reductase family.
     0.994
AMK54364.1
Hypothetical protein; Pfam: VanZ like family.
       0.757
AMK54361.1
Hypothetical protein.
       0.661
AMK54365.1
Pfam: PP-loop family; Belongs to the TtcA family.
       0.471
AMK55439.1
Pfam: Transaldolase.
  
 
 0.464
AMK54795.1
Hypothetical protein; Pfam: Methylenetetrahydrofolate reductase; Pfam: Homocysteine S-methyltransferase.
  
 0.409
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.407
msrA
methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.404
AMK54980.1
Hypothetical protein; 'Pfam: Oxidoreductase family, C-terminal alpha/beta domain; Pfam: Oxidoreductase family, NAD-binding Rossmann fold'.
 
  
 0.402
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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