STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK54483.1Hypothetical protein; 'Pfam: Linear amide C-N hydrolases, choloylglycine hydrolase family'. (329 aa)    
Predicted Functional Partners:
AMK54482.1
Hypothetical protein; Pfam: Cupin domain; Pfam: Carboxymuconolactone decarboxylase family.
       0.522
AMK53723.1
Hypothetical protein; Pfam: Short repeat of unknown function (DUF308).
 
    0.483
AMK53377.1
Hypothetical protein; Pfam: Bacterial extracellular solute-binding protein.
  
     0.435
AMK54484.1
GBSi1, group II intron, maturase.
       0.421
AMK55710.1
Hypothetical protein; Pfam: Short repeat of unknown function (DUF308).
 
    0.408
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.