Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMK53615.1 | infC | AALO17_04810 | AALO17_16600 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.901 |
| AMK53615.1 | rplJ | AALO17_04810 | AALO17_04310 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Hypothetical protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.990 |
| AMK53615.1 | rplT | AALO17_04810 | AALO17_16580 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.978 |
| AMK53615.1 | rpmF | AALO17_04810 | AALO17_10310 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM: rpmF_bact: ribosomal protein L32; Pfam: Ribosomal L32p protein family; Belongs to the bacterial ribosomal protein bL32 family. | 0.957 |
| AMK53615.1 | rpmI | AALO17_04810 | AALO17_16590 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PRINTS: Ribosomal protein L35 signature; TIGRFAM: rpmI_bact: ribosomal protein L35; Pfam: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.961 |
| AMK53615.1 | rpmJ | AALO17_04810 | AALO17_04680 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam: Ribosomal protein L36; TIGRFAM: rpmJ_bact: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.961 |
| AMK53615.1 | rpsB | AALO17_04810 | AALO17_09540 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PRINTS: Ribosomal protein S2 signature; TIGRFAM: rpsB_bact: ribosomal protein S2; Pfam: Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.975 |
| AMK53615.1 | rpsF | AALO17_04810 | AALO17_07600 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.964 |
| AMK53615.1 | rpsP | AALO17_04810 | AALO17_09410 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam: Ribosomal protein S16; TIGRFAM: S16: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.968 |
| AMK53615.1 | rpsR | AALO17_04810 | AALO17_07620 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.970 |
| infC | AMK53615.1 | AALO17_16600 | AALO17_04810 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.901 |
| infC | rplJ | AALO17_16600 | AALO17_04310 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Hypothetical protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.756 |
| infC | rplT | AALO17_16600 | AALO17_16580 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
| infC | rpmF | AALO17_16600 | AALO17_10310 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | TIGRFAM: rpmF_bact: ribosomal protein L32; Pfam: Ribosomal L32p protein family; Belongs to the bacterial ribosomal protein bL32 family. | 0.766 |
| infC | rpmI | AALO17_16600 | AALO17_16590 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | PRINTS: Ribosomal protein L35 signature; TIGRFAM: rpmI_bact: ribosomal protein L35; Pfam: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.972 |
| infC | rpmJ | AALO17_16600 | AALO17_04680 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Pfam: Ribosomal protein L36; TIGRFAM: rpmJ_bact: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.694 |
| infC | rpsB | AALO17_16600 | AALO17_09540 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | PRINTS: Ribosomal protein S2 signature; TIGRFAM: rpsB_bact: ribosomal protein S2; Pfam: Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.924 |
| infC | rpsF | AALO17_16600 | AALO17_07600 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.907 |
| infC | rpsP | AALO17_16600 | AALO17_09410 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Pfam: Ribosomal protein S16; TIGRFAM: S16: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.849 |
| infC | rpsR | AALO17_16600 | AALO17_07620 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.925 |
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