STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK54968.1Hypothetical protein. (295 aa)    
Predicted Functional Partners:
AMK54969.1
Hypothetical protein.
 
     0.946
AMK54967.1
Pfam: Transcriptional regulator.
 
     0.651
AMK54058.1
'SMART: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; PRINTS: Glutamate/leucine/phenylalanine/valine dehydrogenase signature; Pfam: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Pfam: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain'; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.586
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
   
 
 0.526
AMK54510.1
Hypothetical protein; Pfam: Cupin domain.
 
    0.517
AMK55811.1
Hypothetical protein; Pfam: Cupin domain.
 
    0.511
AMK54482.1
Hypothetical protein; Pfam: Cupin domain; Pfam: Carboxymuconolactone decarboxylase family.
 
    0.503
AMK53214.1
'TIGRFAM: recQ: ATP-dependent DNA helicase RecQ; Pfam: HRDC domain; Pfam: Helicase conserved C-terminal domain; SMART: Helicase and RNase D C-terminal; TIGRFAM: recQ_fam: ATP-dependent DNA helicase, RecQ family; SMART: DEAD-like helicases superfamily; Pfam: DEAD/DEAH box helicase; Pfam: RQC domain; SMART: helicase superfamily c-terminal domain'.
  
 
 0.500
AMK54966.1
ATP-dependent DNA helicase PcrA; Pfam: UvrD-like helicase C-terminal domain; Pfam: UvrD/REP helicase N-terminal domain.
  
   0.485
AMK54437.1
Hypothetical protein; 'Pfam: Bacterial regulatory helix-turn-helix protein, lysR family; Pfam: LysR substrate binding domain; PRINTS: LysR bacterial regulatory protein HTH signature'; Belongs to the LysR transcriptional regulatory family.
 
    0.472
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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