STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55000.1Amino acid ABC transporter membrane protein, PAAT family; 'Pfam: Binding-protein-dependent transport system inner membrane component; TIGRFAM: HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family'. (216 aa)    
Predicted Functional Partners:
AMK55001.1
Hypothetical protein; 'Pfam: Bacterial extracellular solute-binding proteins, family 3; SMART: Bacterial periplasmic substrate-binding proteins'.
 
 0.998
AMK54999.1
Hypothetical protein; Pfam: ABC transporter; SMART: ATPases associated with a variety of cellular activities.
 
 0.996
AMK53552.1
ABC transporter ATP-binding protein; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.
 
 0.986
AMK53550.1
Hypothetical protein; 'SMART: Bacterial periplasmic substrate-binding proteins; Pfam: Bacterial extracellular solute-binding proteins, family 3'.
 
 0.985
AMK55164.1
Hypothetical protein; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.
 
 0.985
AMK55877.1
Hypothetical protein; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.
 
 0.985
AMK55879.1
Amino acid ABC transporter amino acid-binding protein/permease protein putative; 'Pfam: Bacterial extracellular solute-binding proteins, family 3; SMART: Bacterial periplasmic substrate-binding proteins'.
 
 0.985
AMK55166.1
Hypothetical protein; 'SMART: Bacterial periplasmic substrate-binding proteins; Pfam: Bacterial extracellular solute-binding proteins, family 3'.
 
 0.974
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
      0.668
AMK55878.1
'Pfam: Binding-protein-dependent transport system inner membrane component; TIGRFAM: HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family'.
 
  
 
0.627
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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