STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55026.1Coenzyme PQQ biosynthesis protein E; 'SMART: Elongator protein 3, MiaB family, Radical SAM; Pfam: 4Fe-4S single cluster domain; Pfam: Radical SAM superfamily'. (475 aa)    
Predicted Functional Partners:
AMK55027.1
Hypothetical protein; 'Pfam: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-SF-IIB: HAD hydrolase, family IIB'.
  
    0.555
AMK55028.1
Hypothetical protein; Pfam: haloacid dehalogenase-like hydrolase.
  
    0.555
AMK55029.1
Pfam: Protein of unknown function (DUF1275).
       0.535
AMK53924.1
Ammonium transporter; Pfam: Nitrogen regulatory protein P-II; Pfam: Ammonium Transporter Family; PRINTS: P-II protein signature; SMART: Nitrogen regulatory protein P-II; TIGRFAM: amt: ammonium transporter; Belongs to the P(II) protein family.
  
  
 0.487
AMK54487.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; 'Pfam: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; Pfam: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; SMART: Domain of unknown function; Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam: Domain of unknown function; TIGRFAM: pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; Pfam: 4Fe-4S dicluster domain'.
  
  
 0.486
AMK53476.1
Pfam: Uroporphyrinogen-III synthase HemD; Pfam: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase.
  
  
 0.485
AMK55079.1
Hypothetical protein; Pfam: Catalytic LigB subunit of aromatic ring-opening dioxygenase; Pfam: AMMECR1; TIGRFAM: AmmeMemoSam_A: AmmeMemoRadiSam system protein A.
  
     0.446
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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