STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55028.1Hypothetical protein; Pfam: haloacid dehalogenase-like hydrolase. (270 aa)    
Predicted Functional Partners:
AMK55027.1
Hypothetical protein; 'Pfam: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-SF-IIB: HAD hydrolase, family IIB'.
 
   
0.826
AMK55029.1
Pfam: Protein of unknown function (DUF1275).
  
    0.782
AMK54146.1
Hypothetical protein; 'TIGRFAM: HAD-SF-IIB: HAD hydrolase, family IIB; Pfam: haloacid dehalogenase-like hydrolase'.
  
     0.736
AMK54525.1
Hypothetical protein; 'TIGRFAM: Cof-subfamily: Cof-like hydrolase; Pfam: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-SF-IIB: HAD hydrolase, family IIB'.
  
    0.726
AMK55643.1
'TIGRFAM: HAD-SF-IIB: HAD hydrolase, family IIB; Pfam: haloacid dehalogenase-like hydrolase'.
  
     0.695
AMK55586.1
Cof-like hydrolase; 'PRINTS: P-type cation-transporting ATPase superfamily signature; TIGRFAM: HAD-SF-IIB: HAD hydrolase, family IIB; Pfam: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof-subfamily: Cof-like hydrolase'.
  
    0.693
AMK54819.1
'TIGRFAM: Cof-subfamily: Cof-like hydrolase; TIGRFAM: HAD-SF-IIB: HAD hydrolase, family IIB; Pfam: haloacid dehalogenase-like hydrolase'.
  
    0.685
AMK55327.1
Hypothetical protein; 'TIGRFAM: HAD-SF-IIB: HAD hydrolase, family IIB; Pfam: haloacid dehalogenase-like hydrolase'.
  
     0.683
AMK54944.1
'TIGRFAM: Cof-subfamily: Cof-like hydrolase; TIGRFAM: HAD-SF-IIB: HAD hydrolase, family IIB; Pfam: haloacid dehalogenase-like hydrolase'.
  
    0.658
AMK55671.1
Hypothetical protein; Pfam: haloacid dehalogenase-like hydrolase.
  
    0.591
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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