STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55068.1Hypothetical protein; Pfam: Serpin (serine protease inhibitor); SMART: SERine Proteinase INhibitors; Belongs to the serpin family. (419 aa)    
Predicted Functional Partners:
AMK55739.1
ATPase of the AAA+ class; SMART: ATPases associated with a variety of cellular activities; PRINTS: CbxX/CfqX protein signature; PRINTS: CbxX/CfqX superfamily signature; Pfam: ATPase family associated with various cellular activities (AAA).
    
  0.582
AMK55067.1
Hypothetical protein; Pfam: Peptidase C26.
       0.439
AMK54521.1
Hypothetical protein; PRINTS: Ankyrin repeat signature; Pfam: Ankyrin repeat; SMART: ankyrin repeats; Pfam: Ankyrin repeats (3 copies).
  
 
 0.412
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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