STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55105.13-hexulose-6-phosphate synthase; SMART: Orotidine 5'-phosphate decarboxylase / HUMPS family; Pfam: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: RuMP_HxlA: 3-hexulose-6-phosphate synthase. (220 aa)    
Predicted Functional Partners:
AMK55106.1
TIGRFAM: RuMP_HxlB: 6-phospho 3-hexuloisomerase; Pfam: SIS domain.
 
 0.999
AMK54045.1
Pfam: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); TIGRFAM: rpiA: ribose 5-phosphate isomerase A.
    
 0.921
AMK54451.1
TIGRFAM: rpe: ribulose-phosphate 3-epimerase; Pfam: Ribulose-phosphate 3 epimerase family; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.904
AMK53529.1
2-deoxy-D-gluconate 3-dehydrogenase; PRINTS: Short-chain dehydrogenase/reductase (SDR) superfamily signature; PRINTS: Glucose/ribitol dehydrogenase family signature; Pfam: short chain dehydrogenase.
     
  0.800
AMK55107.1
Nucleotidyltransferase; Pfam: Mannose-6-phosphate isomerase.
       0.727
AMK55829.1
Carbohydrate isomerase; Pfam: SIS domain.
  
  
 0.653
AMK55101.1
Hypothetical protein; Pfam: Peptidase M16 inactive domain; Pfam: Insulinase (Peptidase family M16).
       0.497
AMK55102.1
Hypothetical protein; Pfam: Peptidase M16 inactive domain.
       0.497
AMK55103.1
Hypothetical protein.
       0.497
AMK55104.1
Hypothetical protein; Pfam: Listeria-Bacteroides repeat domain (List_Bact_rpt).
       0.497
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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