STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55117.1Pfam: CpXC protein. (152 aa)    
Predicted Functional Partners:
AMK55118.1
xaa-Pro aminopeptidase; Pfam: Creatinase/Prolidase N-terminal domain; Pfam: Metallopeptidase family M24.
       0.782
AMK55116.1
Hypothetical protein.
       0.773
AMK55115.1
Type III restriction protein; 'Pfam: Domain of unknown function (DUF4145); Pfam: Helicase conserved C-terminal domain; Pfam: EcoEI R protein C-terminal; Pfam: Type I restriction enzyme R protein N terminus (HSDR_N); Pfam: Type III restriction enzyme, res subunit; SMART: DEAD-like helicases superfamily'.
       0.603
AMK55119.1
Hypothetical protein.
       0.556
AMK55120.1
Hypothetical protein.
       0.546
AMK55113.1
Hypothetical protein; Pfam: Type I restriction modification DNA specificity domain.
       0.544
AMK55114.1
Site-spific DNA-methyltransferase (adenine-spific); Pfam: HsdM N-terminal domain; Pfam: N-6 DNA Methylase; PRINTS: N12 class N6 adenine-specific DNA methyltransferase signature.
       0.544
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.