STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55146.1Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family. (316 aa)    
Predicted Functional Partners:
AMK55147.1
Hypothetical protein; Displays ATPase and GTPase activities.
  
  
 0.938
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
  
 0.931
AMK55144.1
Hypothetical protein.
       0.779
AMK55143.1
Pfam: ZIP Zinc transporter.
       0.747
AMK55142.1
Pfam: Protein of unknown function (DUF1312).
       0.732
AMK55141.1
Hypothetical protein; Pfam: Heptaprenyl diphosphate synthase component I.
       0.710
AMK55140.1
Hypothetical protein.
       0.702
AMK54454.1
'SMART: Sigma factor PP2C-like phosphatases; SMART: Serine/threonine phosphatases, family 2C, catalytic domain; Pfam: Protein phosphatase 2C'.
  
  
 0.630
AMK55148.1
Hypothetical protein.
       0.554
AMK55149.1
Hypothetical protein; Pfam: TrkA-C domain; Pfam: TrkA-N domain.
       0.554
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.