STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55207.1Pfam: Penicillin-binding Protein dimerisation domain; Pfam: PASTA domain; Pfam: Penicillin binding protein transpeptidase domain. (732 aa)    
Predicted Functional Partners:
AMK54239.1
Pfam: Penicillin-binding Protein dimerisation domain; Pfam: Penicillin binding protein transpeptidase domain.
  
  
0.935
AMK53153.1
Pfam: Cell cycle protein; Belongs to the SEDS family.
 
 0.926
AMK53815.1
Pfam: Cell cycle protein; Belongs to the SEDS family.
 
 0.904
AMK54856.1
Hypothetical protein.
 
 
 0.891
AMK53796.1
Pfam: Penicillin binding protein transpeptidase domain; Pfam: Transglycosylase.
 
 
 
 0.881
AMK55206.1
SMART: Cell division protein FtsA.
 
 
 0.855
murE
UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
  
 0.842
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
 0.831
AMK54218.1
'Pfam: Mur ligase family, catalytic domain; Pfam: Mur ligase family, glutamate ligase domain; Pfam: Mur ligase middle domain'.
 
 
 0.802
mraZ
Protein MraZ; TIGRFAM: TIGR00242: protein MraZ; Pfam: MraZ protein; Belongs to the MraZ family.
 
  
 0.753
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.