STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmHS-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (312 aa)    
Predicted Functional Partners:
mraZ
Protein MraZ; TIGRFAM: TIGR00242: protein MraZ; Pfam: MraZ protein; Belongs to the MraZ family.
  
 0.989
AMK55207.1
Pfam: Penicillin-binding Protein dimerisation domain; Pfam: PASTA domain; Pfam: Penicillin binding protein transpeptidase domain.
  
 0.831
AMK55209.1
Hypothetical protein.
       0.774
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
   
 0.732
AMK55206.1
SMART: Cell division protein FtsA.
  
  
 0.723
fhs
Pfam: Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.
 
      0.712
rpsI
Pfam: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.674
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
 
 0.653
rpsP
Pfam: Ribosomal protein S16; TIGRFAM: S16: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.645
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
 
 0.627
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.