STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55218.1Metallo-beta-lactamase domain protein; SMART: Metallo-beta-lactamase superfamily; Pfam: Metallo-beta-lactamase superfamily. (388 aa)    
Predicted Functional Partners:
AMK53926.1
Hypothetical protein; Pfam: Flavin reductase like domain; SMART: Flavin reductase like domain.
  
 0.958
AMK55217.1
Hypothetical protein.
       0.705
AMK54552.1
Pfam: Desulfoferrodoxin.
 
  
 0.697
AMK55219.1
Hypothetical protein; Pfam: Alpha/beta hydrolase family.
       0.603
AMK55220.1
Hypothetical protein.
       0.603
AMK55221.1
Hypothetical protein.
       0.603
AMK54487.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; 'Pfam: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; Pfam: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; SMART: Domain of unknown function; Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam: Domain of unknown function; TIGRFAM: pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; Pfam: 4Fe-4S dicluster domain'.
  
  
 0.418
AMK55222.1
'Pfam: Reverse transcriptase (RNA-dependent DNA polymerase); Pfam: Group II intron, maturase-specific domain; PRINTS: RNA-dependent DNA-polymerase (msDNA) signature'.
       0.416
AMK55570.1
Hypothetical protein; Pfam: Rubrerythrin.
 
  
 0.405
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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