STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55285.1Hypothetical protein; 'PRINTS: GntR bacterial regulatory protein HTH signature; Pfam: UTRA domain; Pfam: Bacterial regulatory proteins, gntR family; SMART: helix_turn_helix gluconate operon transcriptional repressor'. (235 aa)    
Predicted Functional Partners:
AMK53556.1
Hypothetical protein; 'Pfam: UTRA domain; Pfam: Bacterial regulatory proteins, gntR family'.
  
     0.770
AMK55481.1
Hypothetical protein; 'PRINTS: GntR bacterial regulatory protein HTH signature; SMART: helix_turn_helix gluconate operon transcriptional repressor; Pfam: Bacterial regulatory proteins, gntR family; Pfam: UTRA domain'.
  
     0.618
AMK55262.1
'Pfam: phosphotransferase system, EIIB; Pfam: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; TIGRFAM: PTBA: PTS system, glucose subfamily, IIA component; Pfam: Phosphotransferase system, EIIC; TIGRFAM: PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component'.
 
  
 0.595
AMK54988.1
PTS sucrose transporter subunit IIABC; 'TIGRFAM: PTBA: PTS system, glucose subfamily, IIA component; Pfam: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; Pfam: Phosphotransferase system, EIIC'.
 
  
 0.566
AMK53311.1
Hypothetical protein; 'Pfam: Phosphotransferase system, EIIC; TIGRFAM: EIIB_glc: PTS system, glucose-like IIB component; Pfam: phosphotransferase system, EIIB; TIGRFAM: PTS-II-BC-unk1: PTS system, IIBC component'.
 
  
 0.557
AMK54716.1
TIGRFAM: nagA: N-acetylglucosamine-6-phosphate deacetylase; Pfam: Amidohydrolase family.
 
  
 0.542
AMK55287.1
acyl-CoA dehydrogenase; 'Pfam: Electron transfer flavoprotein FAD-binding domain; Pfam: Rubredoxin; PRINTS: Rubredoxin signature; Pfam: Acyl-CoA dehydrogenase, N-terminal domain; Pfam: Acyl-CoA dehydrogenase, middle domain; Pfam: Acyl-CoA dehydrogenase, C-terminal domain'.
       0.525
AMK54349.1
Hypothetical protein; SMART: Helix-turn-helix XRE-family like proteins; Pfam: Helix-turn-helix.
  
  
 0.469
AMK55696.1
Hypothetical protein; 'Pfam: FCD domain; SMART: helix_turn_helix gluconate operon transcriptional repressor; PRINTS: GntR bacterial regulatory protein HTH signature; Pfam: Bacterial regulatory proteins, gntR family'.
  
  
 0.447
AMK53524.1
fCD domain-containing protein; 'PRINTS: GntR bacterial regulatory protein HTH signature; SMART: helix_turn_helix gluconate operon transcriptional repressor; Pfam: FCD domain; Pfam: Bacterial regulatory proteins, gntR family'.
  
  
 0.407
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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