STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55341.1Hypothetical protein. (221 aa)    
Predicted Functional Partners:
msrA
methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
 0.999
AMK55318.1
Ribonucleotide-diphosphate reductase subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 
 0.942
AMK54487.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; 'Pfam: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; Pfam: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; SMART: Domain of unknown function; Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam: Domain of unknown function; TIGRFAM: pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; Pfam: 4Fe-4S dicluster domain'.
  
 
 0.735
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.691
dnaK
Chaperone dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.678
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
   0.665
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
   
   0.659
msrB
Pfam: SelR domain; TIGRFAM: TIGR00357: methionine-R-sulfoxide reductase.
   
 0.607
AMK53196.1
Pfam: Pyridine nucleotide-disulphide oxidoreductase; PRINTS: Pyridine nucleotide disulphide reductase class-II signature; PRINTS: FAD-dependent pyridine nucleotide reductase signature; TIGRFAM: TRX_reduct: thioredoxin-disulfide reductase.
  
 
 0.588
AMK53686.1
Hypothetical protein; PRINTS: Pyridine nucleotide disulphide reductase class-II signature; Pfam: Pyridine nucleotide-disulphide oxidoreductase; PRINTS: FAD-dependent pyridine nucleotide reductase signature.
  
 
 0.588
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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