STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55447.1Pfam: CorA-like Mg2+ transporter protein. (301 aa)    
Predicted Functional Partners:
AMK55448.1
RsmD family RNA methyltransferase; 'Pfam: Conserved hypothetical protein 95; TIGRFAM: TIGR00095: RNA methyltransferase, RsmD family'.
       0.783
AMK55449.1
Hypothetical protein; Pfam: DNA alkylation repair enzyme.
       0.566
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.477
AMK55445.1
Hypothetical protein; 'Pfam: DeoR-like helix-turn-helix domain; SMART: helix_turn_helix, Deoxyribose operon repressor; PRINTS: LacR bacterial regulatory protein HTH signature; Pfam: DeoR C terminal sensor domain'.
       0.460
AMK54624.1
Hypothetical protein; 'TIGRFAM: put_anti_recept: phage minor structural protein, N-terminal region'.
  
     0.430
AMK55800.1
Hypothetical protein; TIGRFAM: B_ant_repeat: conserved repeat domain; Pfam: T surface-antigen of pili; TIGRFAM: strep_pil_rpt: streptococcal pilin isopeptide linkage domain; Pfam: LRR adjacent; Pfam: Domain of unknown function DUF11.
 
    0.410
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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