STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55449.1Hypothetical protein; Pfam: DNA alkylation repair enzyme. (237 aa)    
Predicted Functional Partners:
AMK55447.1
Pfam: CorA-like Mg2+ transporter protein.
       0.566
AMK55448.1
RsmD family RNA methyltransferase; 'Pfam: Conserved hypothetical protein 95; TIGRFAM: TIGR00095: RNA methyltransferase, RsmD family'.
       0.548
AMK54844.1
Hypothetical protein; 'Pfam: PDZ domain; PRINTS: HtrA/DegQ protease family signature; SMART: Domain present in PSD-95, Dlg, and ZO-1/2; Pfam: Trypsin-like peptidase domain'.
  
    0.436
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.