STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55528.1Hypothetical protein; TIGRFAM: casB_cse2: CRISPR type I-E/ECOLI-associated protein CasB/Cse2; Pfam: CRISPR-associated protein Cse2 (CRISPR_cse2). (200 aa)    
Predicted Functional Partners:
AMK55529.1
Pfam: CRISPR-associated protein Cse1 (CRISPR_cse1); TIGRFAM: casA_cse1: CRISPR type I-E/ECOLI-associated protein CasA/Cse1.
 
 
 0.996
AMK55527.1
'Pfam: CT1975-like protein; TIGRFAM: casC_Cse4: CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI'.
 
 
 0.995
AMK55525.1
'Pfam: CRISPR associated protein; TIGRFAM: casE_Cse3: CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI'.
 
 
 0.992
AMK55526.1
'Pfam: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR_cas5: CRISPR-associated protein Cas5; TIGRFAM: casD_Cas5e: CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI'.
 
 
 0.992
cas1-2
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.952
AMK55523.1
'Pfam: CRISPR-associated protein (Cas_Cas2CT1978); Pfam: Exonuclease; TIGRFAM: cas_CT1978: CRISPR-associated endoribonuclease Cas2, subtype I-E/ECOLI'.
 
     0.913
AMK55530.1
Hypothetical protein; TIGRFAM: cas3_core: CRISPR-associated helicase Cas3; SMART: DEAD-like helicases superfamily; SMART: helicase superfamily c-terminal domain; Pfam: DEAD/DEAH box helicase; TIGRFAM: cas3_HD: CRISPR-associated endonuclease Cas3-HD.
 
  
 0.897
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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