STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55621.1Hypothetical protein; Pfam: Acyltransferase family. (340 aa)    
Predicted Functional Partners:
AMK55622.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
      0.978
ddl
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
  
 0.896
AMK54007.1
Hypothetical protein; SMART: LytTr DNA-binding domain; Pfam: LytTr DNA-binding domain.
 
     0.752
AMK54171.1
Hypothetical protein; Pfam: Endoribonuclease L-PSP.
 
    0.734
AMK54964.1
Hypothetical protein; Pfam: CamS sex pheromone cAM373 precursor.
  
     0.712
AMK54604.1
Hypothetical protein; 'SMART: Leucine-rich repeat, SDS22-like subfamily; Pfam: Leucine Rich repeats (2 copies)'.
  
     0.709
AMK54688.1
Hypothetical protein; SMART: Forkhead associated domain; Pfam: FHA domain.
 
  
 0.701
AMK54590.1
Hypothetical protein; Pfam: D-alanyl-D-alanine carboxypeptidase.
 
   
 0.668
AMK54239.1
Pfam: Penicillin-binding Protein dimerisation domain; Pfam: Penicillin binding protein transpeptidase domain.
 
   
 0.657
AMK54330.1
Hypothetical protein; Pfam: Calcineurin-like phosphoesterase.
  
     0.655
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.