STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55725.1'Pfam: Helix-turn-helix domain; PRINTS: AraC bacterial regulatory protein HTH signature; SMART: helix_turn_helix, arabinose operon control protein; Pfam: AraC-like ligand binding domain'. (286 aa)    
Predicted Functional Partners:
AMK55724.1
Hypothetical protein; Pfam: Bacterial extracellular solute-binding protein.
 
  
 0.773
AMK55722.1
ABC transporter, permease protein; Pfam: Binding-protein-dependent transport system inner membrane component.
 
  
 0.671
AMK55720.1
Alpha-galactosidase; PRINTS: Glycosyl hydrolase family 36 signature; Pfam: Melibiase.
 
   
 0.642
AMK55723.1
Pfam: Binding-protein-dependent transport system inner membrane component.
 
  
 0.639
AMK55721.1
Hypothetical protein; 'TIGRFAM: sucrose_gtfA: sucrose phosphorylase; Pfam: Alpha amylase, catalytic domain; SMART: Alpha-amylase domain'; Belongs to the glycosyl hydrolase 13 family. Sucrose phosphorylase subfamily.
 
   
 0.609
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.480
rpoA-2
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.480
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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