STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK55771.1Hypothetical protein. (269 aa)    
Predicted Functional Partners:
AMK54487.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; 'Pfam: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; Pfam: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; SMART: Domain of unknown function; Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam: Domain of unknown function; TIGRFAM: pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; Pfam: 4Fe-4S dicluster domain'.
  
 
 0.987
dnaK
Chaperone dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.930
htpG
Hypothetical protein; Molecular chaperone. Has ATPase activity.
  
 0.874
AMK55769.1
Hypothetical protein.
   
 
 0.801
grpE
Hypothetical protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dep [...]
  
 
 0.784
AMK55770.1
Hypothetical protein.
       0.773
AMK54710.1
ATP-dependent chaperone ClpB; 'SMART: C-terminal, D2-small domain, of ClpB protein; SMART: ATPases associated with a variety of cellular activities; Pfam: AAA domain (Cdc48 subfamily); Pfam: ATPase family associated with various cellular activities (AAA); PRINTS: ATP-dependent Clp protease ATP-binding subunit signature; Pfam: C-terminal, D2-small domain, of ClpB protein'; Belongs to the ClpA/ClpB family.
  
 
 0.734
AMK55184.1
Hypothetical protein; 'Pfam: Methyltransferase domain; SMART: helix_turn_helix, mercury resistance; Pfam: MerR HTH family regulatory protein'.
  
 
 0.700
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
 
 0.687
AMK53615.1
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.687
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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