STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP51866.1Phenylacetate-coenzyme A ligase PaaF; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (431 aa)    
Predicted Functional Partners:
AOP51867.1
Phenylacetic acid degradation protein PaaD, thioesterase.
 
  
 0.936
AOP51865.1
Transcriptional regulator, TetR family.
       0.801
AOP51868.1
Phenylacetate-CoA oxygenase, PaaG subunit.
 
  
 0.723
AOP51856.1
Aldehyde dehydrogenase, PaaZ.
 
 
 
 0.700
AOP51869.1
Phenylacetate-CoA oxygenase, PaaH subunit.
 
  
 0.693
AOP51870.1
Phenylacetate-CoA oxygenase, PaaI subunit.
 
  
 0.688
AOP51871.1
Phenylacetate-CoA oxygenase, PaaJ subunit.
 
   
 0.680
livF
Branched-chain amino acid transport ATP-binding protein LivF; TCDB 3.A.1.4.1.
 
    0.616
AOP51872.1
Phenylacetate-CoA oxygenase/reductase, PaaK subunit.
 
  
 0.559
AOP52682.1
Enoyl-CoA hydratase [isoleucine degradation]; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase.
  
  
 0.493
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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