STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP51936.12-hydroxyhepta-2,4-diene-1,7-dioate isomerase; 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase. (283 aa)    
Predicted Functional Partners:
AOP53166.1
Xaa-Pro dipeptidase, putative.
      0.570
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
   0.538
AOP53114.1
Acetoacetyl-CoA synthetase.
  
  
 0.511
AOP55092.1
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.505
AOP52510.1
Proline dehydrogenase (Proline oxidase); Delta-1-pyrroline-5-carboxylate dehydrogenase.
  
   0.498
AOP51937.1
Membrane protein involved in colicin uptake-like protein.
       0.497
AOP52521.1
Homoprotocatechuate 2,3-dioxygenase.
     
 0.469
AOP54666.1
NAD(P)HX dehydratase.
  
    0.469
AOP54404.1
Putative L-lactate dehydrogenase, hypothetical protein subunit YkgG.
  
    0.464
AOP55453.1
2,4-dienoyl-CoA reductase [NADPH].
     
 0.462
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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