STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP51939.1Hydroxymethylglutaryl-CoA lyase; Belongs to the alpha-IPM synthase/homocitrate synthase family. (306 aa)    
Predicted Functional Partners:
AOP51940.1
Hydroxymethylglutaryl-CoA lyase; Belongs to the CoA-transferase III family.
  
  0.901
AOP52685.1
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit.
 
 0.834
AOP51938.1
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
  0.679
AOP53188.1
Acetyl-coenzyme A carboxyl transferase beta chain; Propionyl-CoA carboxylase beta chain.
 
 0.624
AOP54350.1
3-isopropylmalate dehydrogenase.
 
  
 0.593
AOP52499.1
Sulfopyruvate decarboxylase - beta subunit.
  
 
 0.557
AOP51944.1
Transcriptional regulator, IclR family.
       0.542
AOP51943.1
Tricarboxylate transport membrane protein TctA.
       0.541
AOP51941.1
Putative tricarboxylic transport TctC.
       0.523
leuD
3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
  
  
 0.517
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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