Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AOP52060.1Hypothetical protein. (413 aa)    
Predicted Functional Partners:
AOP52350.1
Transcriptional regulator.
  
    0.660
AOP53664.1
Phage terminase, large subunit.
  
     0.583
AOP55058.1
Phage terminase, large subunit.
  
     0.577
AOP54602.1
Phage terminase, large subunit.
  
     0.568
AOP52414.1
Phytoene dehydrogenase-related protein.
 
     0.549
AOP52061.1
Fatty-acid-CoA ligase FadD7.
 
     0.540
AOP52510.1
Proline dehydrogenase (Proline oxidase); Delta-1-pyrroline-5-carboxylate dehydrogenase.
 
   
 0.511
AOP53618.1
Hypothetical protein.
 
    0.507
AOP53640.1
Hypothetical protein.
 
    0.500
AOP55059.1
Phage capsid and scaffold.
  
     0.460
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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