STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP52084.1Manganese ABC transporter, periplasmic-binding protein SitA. (301 aa)    
Predicted Functional Partners:
AOP52082.1
Manganese ABC transporter, inner membrane permease protein SitD.
  
 0.993
AOP52832.1
Manganese ABC transporter, inner membrane permease protein SitD.
  
 0.970
AOP52083.1
Manganese ABC transporter, ATP-binding protein SitB.
  
 0.968
AOP55162.1
Zinc ABC transporter, inner membrane permease protein ZnuB.
  
 0.934
AOP52831.1
Manganese ABC transporter, ATP-binding protein SitB.
  
 0.865
AOP55163.1
Zinc ABC transporter, ATP-binding protein ZnuC.
  
 0.724
AOP52634.1
Zinc ABC transporter, inner membrane permease protein ZnuB.
 
  
 0.569
AOP55166.1
Zinc uptake regulation protein ZUR.
  
  
 0.526
AOP52633.1
Zinc ABC transporter, ATP-binding protein ZnuC.
 
  
 0.488
rpsN
SSU ribosomal protein S14p (S29e) - SSU ribosomal protein S14p (S29e), zinc-independent; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.481
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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