Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AOP52085.1Putative integral membrane protein. (523 aa)    
Predicted Functional Partners:
AOP54805.1
ATP-dependent DNA ligase clustered with Ku protein, LigD.
 
     0.553
sucD
Succinyl-CoA ligase [ADP-forming] alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
      0.524
AOP52414.1
Phytoene dehydrogenase-related protein.
 
     0.521
AOP55405.1
A3(2) glycogen metabolism cluster protein.
 
     0.472
AOP52086.1
High-affinity choline uptake protein BetT; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.453
AOP52087.1
High-affinity choline uptake protein BetT.
       0.453
AOP52082.1
Manganese ABC transporter, inner membrane permease protein SitD.
       0.436
AOP52083.1
Manganese ABC transporter, ATP-binding protein SitB.
       0.436
AOP52084.1
Manganese ABC transporter, periplasmic-binding protein SitA.
       0.436
AOP53618.1
Hypothetical protein.
 
     0.428
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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