STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP52094.1Type I restriction-modification system, DNA-methyltransferase subunit M. (542 aa)    
Predicted Functional Partners:
AOP52095.1
Type I restriction-modification system, specificity subunit S.
 
 
 0.988
AOP52097.1
Type I restriction-modification system, restriction subunit R.
 
 
 0.968
AOP52093.1
Hypothetical protein.
       0.854
AOP53434.1
Hypothetical protein.
  
 
 0.741
AOP52096.1
ATP-dependent DNA helicase.
 
    0.733
AOP54134.1
YeeC-like protein.
  
 
 0.713
AOP54151.1
ATPase.
 
  
 0.606
AOP53758.1
Type II restriction enzyme, methylase subunit YeeA; FIG045374.
  
    0.554
AOP52092.1
Hypothetical protein.
       0.534
AOP54341.1
Thymidylate synthase thyX; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
   
   0.523
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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