STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP52129.1Malate synthase. (534 aa)    
Predicted Functional Partners:
AOP52127.1
Isocitrate lyase.
 
 0.993
AOP54799.1
Malate dehydrogenase.
   
 0.667
AOP52542.1
Allantoinase.
 
   0.549
AOP51953.1
Putative D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing.
  
  
 0.544
AOP52133.1
Glycolate dehydrogenase, subunit GlcD.
  
  
 0.544
AOP52128.1
Hypothetical protein.
       0.534
AOP52747.1
2-methylcitrate synthase; Belongs to the citrate synthase family.
  
 
 0.519
gltA
Citrate synthase (si); Belongs to the citrate synthase family.
  
 
 0.519
AOP52126.1
Transcriptional regulator, XRE family.
     
 0.473
AOP52518.1
5-carboxymethyl-2-hydroxymuconate delta-isomerase.
     
 0.458
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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