STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AOP52200.1Ferredoxin reductase. (401 aa)    
Predicted Functional Partners:
AOP52201.1
O-antigen export system, permease protein.
       0.668
AOP52202.1
ABC transporter ATP-binding protein.
       0.668
AOP53641.1
Ferredoxin, 2Fe-2S.
  
 
 0.594
AOP53843.1
Ferredoxin, 2Fe-2S.
  
 
 0.594
AOP51843.1
Sarcosine oxidase delta subunit.
  
 
 0.567
AOP51911.1
Putative Dimethylglycine oxidase; Belongs to the GcvT family.
   
 
 0.566
AOP52113.1
Putative Dimethylglycine oxidase; Belongs to the GcvT family.
   
 
 0.566
AOP52199.1
General stress protein.
       0.565
AOP51845.1
Sarcosine oxidase gamma subunit.
  
 
 0.562
AOP52898.1
D-amino acid dehydrogenase small subunit.
   
 
 0.513
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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