STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP52454.14-hydroxythreonine-4-phosphate dehydrogenase. (341 aa)    
Predicted Functional Partners:
AOP52453.1
Putative type III effector Hop protein.
     0.984
AOP52452.1
2-keto-3-deoxygluconate permease (KDG permease).
 
     0.934
AOP53085.1
Putative type III effector Hop protein.
     0.893
AOP52455.1
Transcriptional regulator, GntR family.
 
     0.684
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
     
 0.568
AOP55199.1
3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II.
  
  
 0.533
AOP53308.1
Sulfur carrier protein adenylyltransferase ThiF.
  
  
 0.498
AOP53580.1
Sulfur carrier protein adenylyltransferase ThiF.
  
  
 0.498
AOP53083.1
Transcriptional repressor of the fructose operon, DeoR family.
 
     0.475
AOP53086.1
Gluconate permease.
 
     0.464
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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