STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP52490.1Protocatechuate 3,4-dioxygenase beta chain. (266 aa)    
Predicted Functional Partners:
AOP52488.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.980
AOP52487.1
Beta-ketoadipate enol-lactone hydrolase.
 
  
 0.952
AOP52489.1
Protocatechuate 3,4-dioxygenase alpha chain.
 
  
0.950
AOP52491.1
P-hydroxybenzoate hydroxylase.
  
 0.945
AOP55092.1
4-hydroxyphenylpyruvate dioxygenase.
 
   
 0.838
AOP53366.1
Beta-ketoadipate enol-lactone hydrolase.
 
  
 0.830
AOP55088.1
Quinate/shikimate 5-dehydrogenase I delta.
 
   
 0.644
AOP52290.1
Glutaconate CoA-transferase subunit B.
 
  
 0.627
AOP52437.1
Muconolactone isomerase.
 
  
 0.602
AOP52289.1
Glutaconate CoA-transferase subunit A.
 
  
 0.566
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.