STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP52818.1Copper metallochaperone, bacterial Cox17-like protein. (190 aa)    
Predicted Functional Partners:
AOP52819.1
Putative Dyp-type peroxidase, associated with bacterial Cox17-like protein.
 
    0.976
AOP55348.1
Iron-dependent peroxidase.
 
    0.894
AOP52820.1
Putative iron-regulated membrane protein; Iron-uptake factor PiuB.
 
    0.878
AOP52817.1
Copper resistance protein CopC.
 
    0.873
AOP51970.1
Putative integral membrane protein.
 
     0.685
AOP51971.1
Putative iron-regulated membrane protein; Iron-uptake factor PiuB.
 
    0.603
AOP52176.1
Copper resistance protein CopC.
  
    0.586
AOP55197.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase.
   
   0.545
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
   
   0.519
pheA
Prephenate dehydratase.
   
   0.519
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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