STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP53206.1Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A. (91 aa)    
Predicted Functional Partners:
AOP53204.1
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B.
 
 0.997
AOP53205.1
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A.
     0.992
AOP53207.1
Hypothetical protein.
  
    0.798
AOP52290.1
Glutaconate CoA-transferase subunit B.
  
 
 0.753
AOP53208.1
Coenzyme F420-0:L-glutamate ligase - Coenzyme F420-1:L-glutamate ligase.
       0.654
AOP52490.1
Protocatechuate 3,4-dioxygenase beta chain.
  
  
 0.553
AOP52682.1
Enoyl-CoA hydratase [isoleucine degradation]; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase.
  
  
 0.544
AOP52693.1
Hydroxymethylglutaryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
     
 0.530
AOP52487.1
Beta-ketoadipate enol-lactone hydrolase.
  
  
 0.513
AOP52692.1
Acyl dehydratase; FIG00820637.
     
 0.513
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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