STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP53721.1Putative lyase. (136 aa)    
Predicted Functional Partners:
AOP53722.1
Transcriptional regulator, AraC family.
 
     0.957
AOP53720.1
Excinuclease ABC subunit A.
     0.943
AOP53723.1
Amino acid permease-associated region.
       0.723
AOP53724.1
Monoamine/putrescine oxidase.
       0.658
AOP54871.1
Putative DeoR-family transcriptional regulator.
 
    0.493
AOP53935.1
Preprotein translocase subunit YajC; TCDB 3.A.5.1.1.
 
     0.470
AOP53453.1
Nucleoside ABC transporter, permease protein 2.
 
     0.460
AOP53725.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.460
AOP53719.1
Putative secreted protein.
       0.451
AOP53726.1
Transcriptional regulator, DeoR family.
  
    0.443
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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