STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP53722.1Transcriptional regulator, AraC family. (144 aa)    
Predicted Functional Partners:
AOP53721.1
Putative lyase.
 
     0.957
AOP54265.1
Putative methylase.
     0.839
AOP53720.1
Excinuclease ABC subunit A.
       0.819
AOP53723.1
Amino acid permease-associated region.
 
     0.806
AOP53724.1
Monoamine/putrescine oxidase.
       0.706
AOP55095.1
Transcriptional regulator, AraC family.
 
   0.581
AOP53549.1
Methylated-DNA--protein-cysteine methyltransferase.
 
   
 0.500
AOP52346.1
Transcriptional regulator, AraC family.
 
   0.493
AOP53725.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.489
AOP52280.1
Transcriptional regulator, AraC family.
 
     0.430
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.