STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP53723.1Amino acid permease-associated region. (514 aa)    
Predicted Functional Partners:
AOP53724.1
Monoamine/putrescine oxidase.
 
   
 0.929
AOP53572.1
Universal stress protein family.
 
    0.811
AOP53722.1
Transcriptional regulator, AraC family.
 
     0.806
AOP51935.1
Universal stress protein family.
 
    0.788
AOP53720.1
Excinuclease ABC subunit A.
       0.726
AOP53721.1
Putative lyase.
       0.723
AOP53725.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.505
AOP54077.1
Non-ribosomal peptide synthetase, terminal component.
 
 
 0.487
AOP54585.1
Cys-tRNA(Pro) deacylase YbaK.
 
     0.478
AOP54527.1
Transcriptional regulator, TetR family.
 
     0.461
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.