Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AOP53821.1YbaK/prolyl-tRNA synthetase associated region. (183 aa)    
Predicted Functional Partners:
AOP53696.1
DNA polymerase III epsilon subunit-related protein.
 
     0.586
rpmE2
LSU ribosomal protein L31p, zinc-independent.
       0.523
AOP54959.1
Putative DNA-binding protein.
 
     0.452
pheT
Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.431
AOP53549.1
Methylated-DNA--protein-cysteine methyltransferase.
     
 0.427
AOP53895.1
16S rRNA (cytosine(967)-C(5))-methyltransferase.
 
   
 0.427
AOP52527.1
Putative serine protease.
  
    0.408
AOP52788.1
Electron transfer flavoprotein-ubiquinone oxidoreductase.
 
     0.406
AOP53657.1
Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]
 
     0.406
AOP53137.1
PF00070 family, FAD-dependent NAD(P)-disulfide oxidoreductase.
  
    0.400
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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