STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP53821.1YbaK/prolyl-tRNA synthetase associated region. (183 aa)    
Predicted Functional Partners:
AOP53696.1
DNA polymerase III epsilon subunit-related protein.
 
     0.599
rpmE2
LSU ribosomal protein L31p, zinc-independent.
       0.544
AOP54959.1
Putative DNA-binding protein.
 
     0.467
AOP53194.1
Protein acetyltransferase.
  
    0.441
AOP53137.1
PF00070 family, FAD-dependent NAD(P)-disulfide oxidoreductase.
  
    0.415
AOP52527.1
Putative serine protease.
  
    0.408
AOP52788.1
Electron transfer flavoprotein-ubiquinone oxidoreductase.
 
     0.405
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.