STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP53843.1Ferredoxin, 2Fe-2S. (107 aa)    
Predicted Functional Partners:
AOP53844.1
Iron-sulfur cluster assembly protein SufD.
 
     0.872
AOP53845.1
Iron-sulfur cluster assembly protein SufB.
 
     0.818
AOP53839.1
PaaD-like protein (DUF59) involved in Fe-S cluster assembly.
 
     0.794
AOP53846.1
Iron-sulfur cluster regulator SufR.
       0.785
AOP53841.1
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.755
AOP53842.1
Iron-sulfur cluster assembly ATPase protein SufC.
       0.755
AOP53840.1
Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2.
       0.752
AOP53536.1
Ferredoxin reductase; At1g63940-like protein.
  
 
 0.751
AOP52895.1
Siroheme synthase; Precorrin-2 oxidase; Sirohydrochlorin ferrochelatase; Uroporphyrinogen-III methyltransferase.
  
  
 0.676
AOP53849.1
Cytochrome oxidase assembly protein.
  
    0.676
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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