STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP53845.1Iron-sulfur cluster assembly protein SufB. (476 aa)    
Predicted Functional Partners:
AOP53842.1
Iron-sulfur cluster assembly ATPase protein SufC.
 
 0.997
AOP53841.1
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.994
AOP53840.1
Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2.
 
  
 0.956
AOP53846.1
Iron-sulfur cluster regulator SufR.
  
  
 0.918
AOP53839.1
PaaD-like protein (DUF59) involved in Fe-S cluster assembly.
 
   
 0.884
AOP53844.1
Iron-sulfur cluster assembly protein SufD.
 
   
0.876
AOP53843.1
Ferredoxin, 2Fe-2S.
 
     0.817
AOP53848.1
ABC-type multidrug transport system, permease component.
       0.706
AOP53849.1
Cytochrome oxidase assembly protein.
       0.705
AOP53847.1
ABC-type multidrug transport system, ATPase component.
       0.632
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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