Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
AOP53961.1DNA polymerase III delta subunit. (327 aa)    
Predicted Functional Partners:
AOP52668.1
DNA polymerase III delta prime subunit.
 
 
 0.970
AOP51724.1
DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
 
 0.964
AOP54038.1
DNA polymerase III alpha subunit.
  
 0.947
AOP53962.1
ComEC/Rec2-related protein.
    
 0.930
AOP53405.1
ATP-dependent DNA helicase.
 
   
 0.731
crgA
Putative septation inhibitor protein; Involved in cell division; Belongs to the CrgA family.
  
     0.699
AOP53407.1
Macrolide 2'-phosphotransferase.
 
     0.696
AOP52397.1
Hypothetical protein; FIG00447931.
 
     0.686
AOP53963.1
comE operon protein 1, putative.
     
 0.672
AOP54041.1
Hypothetical protein; FIG055075; Possibly a cell division protein, antigen 84 in Mycobacteria.
 
     0.632
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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