STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP53962.1ComEC/Rec2-related protein. (754 aa)    
Predicted Functional Partners:
AOP53961.1
DNA polymerase III delta subunit.
    
 0.930
AOP53963.1
comE operon protein 1, putative.
 
  
 0.915
AOP54279.1
Rossmann fold nucleotide-binding protein Smf; Possibly involved in DNA uptake.
 
  
 0.793
AOP53227.1
Competence F-like protein, phosphoribosyltransferase domain; Protein YhgH required for utilization of DNA as sole source of carbon and energy.
 
  
 0.779
AOP54280.1
MG(2+) chelatase family protein; ComM-related protein.
 
  
 0.654
AOP54209.1
Cell division protein FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
 
  
 0.637
pheT
Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
   
 0.626
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.624
AOP54203.1
Regulatory protein RecX.
 
   
 0.622
AOP53964.1
Putative DUF194, DegV family protein.
       0.621
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.