STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP53964.1Putative DUF194, DegV family protein. (291 aa)    
Predicted Functional Partners:
AOP54315.1
Dihydroxyacetone kinase family protein.
   0.903
AOP53965.1
UDP-glucose dehydrogenase.
       0.773
AOP53963.1
comE operon protein 1, putative.
 
     0.714
AOP53962.1
ComEC/Rec2-related protein.
       0.621
AOP53961.1
DNA polymerase III delta subunit.
  
    0.585
AOP53966.1
Hypothetical protein; FIG00448238.
       0.542
AOP54664.1
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA.
 
     0.503
AOP54313.1
16S rRNA (guanine(966)-N(2))-methyltransferase - SSU rRNA m(2)G966.
 
     0.485
AOP53038.1
Integral membrane protein 1906.
 
    0.473
AOP55375.1
Integration host factor alpha subunit; Belongs to the bacterial histone-like protein family.
     
 0.458
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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