STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP54184.1Transcriptional regulator, TetR family. (217 aa)    
Predicted Functional Partners:
AOP54185.1
Nucleoside-diphosphate-sugar epimerase.
 
     0.903
AOP52072.1
Hypothetical protein.
 
     0.501
AOP55140.1
Hypothetical protein.
 
     0.498
AOP52648.1
ABC transporter, permease protein.
 
     0.441
AOP55503.1
Transcriptional regulator, TetR family.
  
     0.419
AOP55455.1
Transcriptional regulator, TetR family.
  
     0.402
AOP54581.1
Hypothetical protein; FIG00448535.
  
 
   0.401
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.