STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AOP54281.1Endonuclease. (132 aa)    
Predicted Functional Partners:
AOP54280.1
MG(2+) chelatase family protein; ComM-related protein.
 
  
 0.967
AOP54279.1
Rossmann fold nucleotide-binding protein Smf; Possibly involved in DNA uptake.
 
  
 0.930
AOP54284.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
    0.719
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
     0.711
AOP54278.1
Tyrosine recombinase XerC.
       0.709
AOP54282.1
Protein often found in Actinomycetes clustered with signal peptidase and/or RNaseHII.
       0.654
AOP54283.1
Ribonuclease HII.
       0.654
AOP54285.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
    0.650
AOP54663.1
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA.
 
     0.601
rplS
LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.579
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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