STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP54308.1ABC amino acid transporter, extracellular solute binding component. (293 aa)    
Predicted Functional Partners:
AOP54309.1
ABC amino acid transporter, permease component.
 
  0.995
AOP54310.1
ABC amino acid transporter, permease component.
 
  0.995
AOP54311.1
Amino acid ABC transporter, ATP-binding protein.
 
 
 0.941
AOP55118.1
ABC transporter permease protein.
 
   0.754
AOP52483.1
Polar amino acid ABC transporter, inner membrane subunit.
 
   0.717
AOP53592.1
ABC-type amino acid transport system, permease component.
 
   0.637
AOP54307.1
Transcriptional regulator, GntR family.
 
     0.621
AOP53593.1
Glutamate transport system permease protein gluD.
 
   0.609
AOP53098.1
Ectoine hydroxylase.
 
   
 0.581
AOP52482.1
ATPase component CbiO of energizing module of cobalt ECF transporter.
 
 
 0.558
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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