STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP54396.1Hypothetical protein; FIG00449326. (539 aa)    
Predicted Functional Partners:
AOP54267.1
Hypothetical protein; FIG00448187.
 
     0.776
AOP53407.1
Macrolide 2'-phosphotransferase.
  
     0.745
AOP55367.1
Hypothetical protein; FIG00447800.
  
     0.731
AOP53210.1
Glycosyl transferase, family 2.
  
     0.708
AOP54910.1
Superfamily I DNA and RNA helicase and helicase subunits.
  
     0.682
AOP54395.1
Thioredoxin domain-containing protein EC-YbbN; FIG000875.
       0.647
rpmF
LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.639
AOP52715.1
Secreted protein; FIG027937.
  
     0.621
AOP53211.1
Putative secreted protein; FIG083739.
  
     0.613
AOP54317.1
Hypothetical protein; FIG00724315.
  
     0.609
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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