STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP54400.1Hypothetical protein. (306 aa)    
Predicted Functional Partners:
AOP54401.1
Lactate-responsive regulator LldR in Actinobacteria, GntR family.
  
    0.751
AOP51974.1
Hypothetical protein.
 
     0.622
AOP54403.1
Putative L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF.
       0.481
AOP54402.1
Putative L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE.
       0.467
AOP54404.1
Putative L-lactate dehydrogenase, hypothetical protein subunit YkgG.
       0.467
AOP53600.1
EAL domain protein.
 
  
 0.462
AOP53888.1
Acetyl-coenzyme A carboxyl transferase beta chain.
  
    0.449
AOP55216.1
Hypothetical protein; FIG01124398.
 
     0.424
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.